PhytophthoraV1, Main, Exploration, bibRecord, 000C57

Effector-driven marker development and cloning of resistance genes against Phytophthora infestans in potato breeding clone SW93-1015.

Identifieur interne : 000C57 ( Main/Exploration ); précédent : 000C56; suivant : 000C58

Effector-driven marker development and cloning of resistance genes against Phytophthora infestans in potato breeding clone SW93-1015.

Auteurs : Marit Lenman [Suède] ; Ashfaq Ali [Suède] ; Per Mühlenbock [Suède] ; Ulrika Carlson-Nilsson [Suède] ; Erland Liljeroth [Suède] ; Nicolas Champouret [Pays-Bas] ; Vivianne G A A. Vleeshouwers [Pays-Bas] ; Erik Andreasson [Suède]

Source :

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [ 1432-2242 ] ; 2016.

RBID : pubmed:26518573

Descripteurs français

English descriptors

KwdEn :
- Amino Acid Sequence (MeSH), Breeding (MeSH), Cloning, Molecular (MeSH), Disease Resistance (genetics), Genes, Plant (MeSH), Genetic Markers (MeSH), Genotype (MeSH), Molecular Sequence Data (MeSH), Phytophthora infestans (MeSH), Plant Diseases (genetics), Plant Diseases (microbiology), Plants, Genetically Modified (genetics), Plants, Genetically Modified (microbiology), Solanum tuberosum (genetics), Solanum tuberosum (microbiology).
MESH :
- chemical : Genetic Markers.
- genetics : Disease Resistance, Plant Diseases, Plants, Genetically Modified, Solanum tuberosum.
- microbiology : Plant Diseases, Plants, Genetically Modified, Solanum tuberosum.
- Amino Acid Sequence, Breeding, Cloning, Molecular, Genes, Plant, Genotype, Molecular Sequence Data, Phytophthora infestans.

Abstract

KEY MESSAGE

We show the usefulness of integrating effector screening in a breeding program and in resistance gene cloning, with Phytophthora resistance in the Swedish potato breeding clone SW93-1015 as an example. Phytophthora infestans is one of the most devastating plant pathogens worldwide. We have earlier found that the SW93-1015 potato breeding clone has an efficient resistance against P. infestans under field conditions in Sweden, which has an unusually high local diversity of the pathogen. This potato clone has characteristics that are different from classical R-gene-mediated resistance such as elevated levels of hydrogen peroxide (H2O2) under controlled conditions. Analysis of 76 F1 potato progenies from two individual crosses resulted in nearly 50% resistant clones, from both crosses. This result suggests that the SW93-1015 clone has a simplex genotype for this trait. Screening with over 50 different P. infestans effectors, containing the conserved motif RXLR (for Arg, any amino acid, Leu, Arg), revealed a specific response to Avr2, which suggests that SW93-1015 might contain a functional homolog of the R2 resistance gene. We cloned eight R2 gene homologs from SW93-1015, whereof seven have not been described before and one gene encoded a protein identical to Rpi-ABPT. Expression of this gene in potato cultivar Désirée provided R2-specific resistance, whereas other homologues did not. Using RNAseq analyses we designed a new DNA marker for the R2 resistance in SW93-1015. In summary, we have demonstrated the use of effector screening in practical breeding material and revealed the key resistance mechanism for SW93-1015.

DOI: 10.1007/s00122-015-2613-y
PubMed: 26518573

Affiliations:

Pays-Bas, Suède

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000D37
to stream Main, to step Curation: 000D37

Le document en format XML

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<series><title level="j">TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</title>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term>
<term>Breeding (MeSH)</term>
<term>Cloning, Molecular (MeSH)</term>
<term>Disease Resistance (genetics)</term>
<term>Genes, Plant (MeSH)</term>
<term>Genetic Markers (MeSH)</term>
<term>Genotype (MeSH)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Phytophthora infestans (MeSH)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Diseases (microbiology)</term>
<term>Plants, Genetically Modified (genetics)</term>
<term>Plants, Genetically Modified (microbiology)</term>
<term>Solanum tuberosum (genetics)</term>
<term>Solanum tuberosum (microbiology)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Clonage moléculaire (MeSH)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Gènes de plante (MeSH)</term>
<term>Génotype (MeSH)</term>
<term>Maladies des plantes (génétique)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Marqueurs génétiques (MeSH)</term>
<term>Phytophthora infestans (MeSH)</term>
<term>Résistance à la maladie (génétique)</term>
<term>Solanum tuberosum (génétique)</term>
<term>Solanum tuberosum (microbiologie)</term>
<term>Sélection (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
<term>Végétaux génétiquement modifiés (génétique)</term>
<term>Végétaux génétiquement modifiés (microbiologie)</term>
</keywords>
<keywords scheme="MESH" type="chemical" xml:lang="en"><term>Genetic Markers</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term>
<term>Plant Diseases</term>
<term>Plants, Genetically Modified</term>
<term>Solanum tuberosum</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Maladies des plantes</term>
<term>Résistance à la maladie</term>
<term>Solanum tuberosum</term>
<term>Végétaux génétiquement modifiés</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term>
<term>Solanum tuberosum</term>
<term>Végétaux génétiquement modifiés</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term>
<term>Plants, Genetically Modified</term>
<term>Solanum tuberosum</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Breeding</term>
<term>Cloning, Molecular</term>
<term>Genes, Plant</term>
<term>Genotype</term>
<term>Molecular Sequence Data</term>
<term>Phytophthora infestans</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Clonage moléculaire</term>
<term>Données de séquences moléculaires</term>
<term>Gènes de plante</term>
<term>Génotype</term>
<term>Marqueurs génétiques</term>
<term>Phytophthora infestans</term>
<term>Sélection</term>
<term>Séquence d'acides aminés</term>
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<front><div type="abstract" xml:lang="en"><p><b>KEY MESSAGE</b>
</p>
<p>We show the usefulness of integrating effector screening in a breeding program and in resistance gene cloning, with Phytophthora resistance in the Swedish potato breeding clone SW93-1015 as an example. Phytophthora infestans is one of the most devastating plant pathogens worldwide. We have earlier found that the SW93-1015 potato breeding clone has an efficient resistance against P. infestans under field conditions in Sweden, which has an unusually high local diversity of the pathogen. This potato clone has characteristics that are different from classical R-gene-mediated resistance such as elevated levels of hydrogen peroxide (H2O2) under controlled conditions. Analysis of 76 F1 potato progenies from two individual crosses resulted in nearly 50% resistant clones, from both crosses. This result suggests that the SW93-1015 clone has a simplex genotype for this trait. Screening with over 50 different P. infestans effectors, containing the conserved motif RXLR (for Arg, any amino acid, Leu, Arg), revealed a specific response to Avr2, which suggests that SW93-1015 might contain a functional homolog of the R2 resistance gene. We cloned eight R2 gene homologs from SW93-1015, whereof seven have not been described before and one gene encoded a protein identical to Rpi-ABPT. Expression of this gene in potato cultivar Désirée provided R2-specific resistance, whereas other homologues did not. Using RNAseq analyses we designed a new DNA marker for the R2 resistance in SW93-1015. In summary, we have demonstrated the use of effector screening in practical breeding material and revealed the key resistance mechanism for SW93-1015.</p>
</div>
</front>
</TEI>
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<DateCompleted><Year>2016</Year>
<Month>05</Month>
<Day>19</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
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<Title>TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</Title>
<ISOAbbreviation>Theor Appl Genet</ISOAbbreviation>
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<ArticleTitle>Effector-driven marker development and cloning of resistance genes against Phytophthora infestans in potato breeding clone SW93-1015.</ArticleTitle>
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<Abstract><AbstractText Label="KEY MESSAGE" NlmCategory="CONCLUSIONS">We show the usefulness of integrating effector screening in a breeding program and in resistance gene cloning, with Phytophthora resistance in the Swedish potato breeding clone SW93-1015 as an example. Phytophthora infestans is one of the most devastating plant pathogens worldwide. We have earlier found that the SW93-1015 potato breeding clone has an efficient resistance against P. infestans under field conditions in Sweden, which has an unusually high local diversity of the pathogen. This potato clone has characteristics that are different from classical R-gene-mediated resistance such as elevated levels of hydrogen peroxide (H2O2) under controlled conditions. Analysis of 76 F1 potato progenies from two individual crosses resulted in nearly 50% resistant clones, from both crosses. This result suggests that the SW93-1015 clone has a simplex genotype for this trait. Screening with over 50 different P. infestans effectors, containing the conserved motif RXLR (for Arg, any amino acid, Leu, Arg), revealed a specific response to Avr2, which suggests that SW93-1015 might contain a functional homolog of the R2 resistance gene. We cloned eight R2 gene homologs from SW93-1015, whereof seven have not been described before and one gene encoded a protein identical to Rpi-ABPT. Expression of this gene in potato cultivar Désirée provided R2-specific resistance, whereas other homologues did not. Using RNAseq analyses we designed a new DNA marker for the R2 resistance in SW93-1015. In summary, we have demonstrated the use of effector screening in practical breeding material and revealed the key resistance mechanism for SW93-1015.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lenman</LastName>
<ForeName>Marit</ForeName>
<Initials>M</Initials>
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<AffiliationInfo><Affiliation>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp, Sweden. marit.lenman@slu.se.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Ali</LastName>
<ForeName>Ashfaq</ForeName>
<Initials>A</Initials>
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</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Mühlenbock</LastName>
<ForeName>Per</ForeName>
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<AffiliationInfo><Affiliation>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</Affiliation>
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<Author ValidYN="Y"><LastName>Carlson-Nilsson</LastName>
<ForeName>Ulrika</ForeName>
<Initials>U</Initials>
<AffiliationInfo><Affiliation>Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.</Affiliation>
</AffiliationInfo>
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</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Champouret</LastName>
<ForeName>Nicolas</ForeName>
<Initials>N</Initials>
<AffiliationInfo><Affiliation>Wageningen UR Plant Breeding, Wageningen University and Research Centre, Wageningen, The Netherlands.</Affiliation>
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<Author ValidYN="Y"><LastName>Vleeshouwers</LastName>
<ForeName>Vivianne G A A</ForeName>
<Initials>VG</Initials>
<AffiliationInfo><Affiliation>Wageningen UR Plant Breeding, Wageningen University and Research Centre, Wageningen, The Netherlands.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Andreasson</LastName>
<ForeName>Erik</ForeName>
<Initials>E</Initials>
<AffiliationInfo><Affiliation>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Alnarp, Sweden.</Affiliation>
</AffiliationInfo>
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<Language>eng</Language>
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<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
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<ArticleDate DateType="Electronic"><Year>2015</Year>
<Month>10</Month>
<Day>30</Day>
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<MedlineJournalInfo><Country>Germany</Country>
<MedlineTA>Theor Appl Genet</MedlineTA>
<NlmUniqueID>0145600</NlmUniqueID>
<ISSNLinking>0040-5752</ISSNLinking>
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<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001947" MajorTopicYN="N">Breeding</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D003001" MajorTopicYN="N">Cloning, Molecular</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017343" MajorTopicYN="Y">Genes, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName>
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<MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName>
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<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D055750" MajorTopicYN="Y">Phytophthora infestans</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D030821" MajorTopicYN="N">Plants, Genetically Modified</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
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Effector-driven marker development and cloning of resistance genes against Phytophthora infestans in potato breeding clone SW93-1015.

Effector-driven marker development and cloning of resistance genes against Phytophthora infestans in potato breeding clone SW93-1015.

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